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Towards a better description of the interactions of food-borne pathogen Enterotoxigenic Escherichia coli with intestinal mucus and human microbiome.

Thomas Sauvaitre , Josefien van Landuyt , Claude Durif , Charlène Roussel , Adeline Sivignon , et al.
13th International Gut Microbiology Symposium 2023, University of Aberdeen, Jun 2023, Aberdeen (Scotland), United Kingdom
Conference papers hal-04215030v1

Mucus-bacteria interactions: impact on Enterotoxigenic Escherichia coli virulence and interplay with the human gut microbiome

Thomas Sauvaitre , Josefien van Landuyt , Claude Durif , Charlène Roussel , Adeline Sivignon , et al.
10th FEMS Congress of European Microbiologists, FEMS, Jul 2023, Hambourg (Neversdorf), Germany
Conference papers hal-04214669v1
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Invasive fungal diseases in patients with autoimmune diseases: a case series from the French RESSIF network

Simon Galmiche , Benjamin Thoreau , Stéphane Bretagne , Alexandre Alanio , André Paugam , et al.
RMD Open, 2023, 9 (3), pp.e003281. ⟨10.1136/rmdopen-2023-003281⟩
Journal articles hal-04205646v1
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Serpin-positive Bifidobacterium breve CNCM I-5644 improves intestinal permeability in two models of irritable bowel syndrome

Edgar Torres-Maravilla , Sophie Holowacz , Johanne Delannoy , Loïc Lenoir , Elsa Jacouton , et al.
Scientific Reports, 2022, 12 (1), pp.19776. ⟨10.1038/s41598-022-21746-8⟩
Journal articles hal-03987260v1

Prevalence of and factors associated with extraintestinal manifestations and their remission in inflammatory bowel disease: the EXTRA prospective study from the GETAID

Lucas Guillo , Guillaume Savoye , Aurélien Amiot , Cyrielle Gilletta , Maria Nachury , et al.
Clinical and translational gastroenterology, 2023, ⟨10.14309/ctg.0000000000000607⟩
Journal articles hal-04206330v1
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The Secretome landscape of Escherichia coli O157:H7: Deciphering the cell-surface, outer membrane vesicle and extracellular subproteomes

Ricardo Monteiro , Ingrid Chafsey , Valentin Ageorges , Sabine Leroy , Christophe Chambon , et al.
Journal of Proteomics, 2021, 232, pp.104025. ⟨10.1016/j.jprot.2020.104025⟩
Journal articles hal-03103302v1
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Adherent-invasive E. coli – induced specific IgA limits pathobiont localization to the epithelial niche in the gut

Rika Tanaka , Jin Imai , Hitoshi Tsugawa , Karl Bil Eap , Masaki Yazawa , et al.
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1031997⟩
Journal articles hal-04181840v1

Impact of HIV Infection on the Course of Inflammatory Bowel Disease and Drug Safety Profile: A Multicenter GETAID Study

Lucas Guillo , Mathieu Uzzan , Laurent Beaugerie , Jean-Marc Gornet , Aurélien Amiot , et al.
Clinical Gastroenterology and Hepatology, 2022, 20 (4), pp.787-797.e2. ⟨10.1016/j.cgh.2020.12.023⟩
Journal articles hal-04168380v1

Genotypic Characteristics and Antimicrobial Resistance of Escherichia coli ST141 Clonal Group

Audrey Emery , Didier Hocquet , Richard Bonnet , Xavier Bertrand
Antibiotics, 2023, 12 (2), pp.382. ⟨10.3390/antibiotics12020382⟩
Journal articles hal-04157615v1
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Obesity in adult patients with inflammatory bowel disease: Clinical features and impact on disability. A cross-sectional survey from the GETAID

Rose Al Bacha , Yoram Bouhnik , Melanie Serrero , Jerome Filippi , Xavier Roblin , et al.
Digestive and Liver Disease, 2023, ⟨10.1016/j.dld.2023.05.008⟩
Journal articles hal-04113898v1
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Dynamics of extended-spectrum cephalosporin resistance genes in Escherichia coli from Europe and North America

Roxana Zamudio , Patrick Boerlin , Racha Beyrouthy , Jean-Yves Madec , Stefan Schwarz , et al.
Nature Communications, 2022, 13 (1), pp.7490. ⟨10.1038/s41467-022-34970-7⟩
Journal articles anses-04143919v1
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Etude de l’association du microbiote intestinal et des caractéristiques de composition corporelle sur les résultats postopératoires du cancer colorectal sporadique non métastatique

Julie Veziant
Médecine humaine et pathologie. Université Clermont Auvergne, 2022. Français. ⟨NNT : 2022UCFAC093⟩
Theses tel-04140778v1
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Specific Proteomic Identification of Collagen-Binding Proteins in Escherichia coli O157:H7: Characterisation of OmpA as a Potent Vaccine Antigen

Ricardo Monteiro , Ingrid Chafsey , Nelly Caccia , Valentin Ageorges , Sabine Leroy , et al.
Cells, 2023, 12 (12), pp.1634. ⟨10.3390/cells12121634⟩
Journal articles hal-04138700v1

Iatrogenic ureteral injury during colorectal surgery has a significant impact on patient outcomes: a French multicentric retrospective cohort study

Victor Sérénon , Philippe Rouanet , Diane Charleux-Muller , Clarisse Eveno , Karine Poirot , et al.
Colorectal Disease, 2023, ⟨10.1111/codi.16630⟩
Journal articles hal-04113776v1
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Prevalence and determinants of fatigue in patients with IBD: a cross-sectional survey from the GETAID.

Aurelien Amiot , Sayma Chaibi , Yoram Bouhnik , Melanie Serrero , Jerome Filippi , et al.
Journal of Crohn's and Colitis, 2023, pp.jjad060. ⟨10.1093/ecco-jcc/jjad060⟩
Journal articles hal-04052487v1
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Evolution of endoscopic lesions in steroid-refractory acute severe ulcerative colitis responding to infliximab or cyclosporine

David Laharie , Arnaud Bourreille , Julien Branche , Matthieu Allez , Yoram Bouhnik , et al.
Clinical Gastroenterology and Hepatology, 2021, 19 (6), pp.1180-1188.e4. ⟨10.1016/j.cgh.2020.08.001⟩
Journal articles hal-03551241v1
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Identification des facteurs favorisant l’implantation des Escherichia coli adhérents et invasifs chez les patients atteints de maladie de Crohn : rôle de régulateurs épigénétiques et du régime alimentaire de type occidental

Mélissa Chervy
Médecine humaine et pathologie. Université Clermont Auvergne, 2022. Français. ⟨NNT : 2022UCFAC071⟩
Theses tel-04091813v1
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Genes mcr improve the intestinal fitness of pathogenic E. coli and balance their lifestyle to commensalism

Guillaume Dalmasso , Racha Beyrouthy , Sandrine Brugiroux , Etienne Ruppé , Laurent Guillouard , et al.
Microbiome, 2023, 11 (1), pp.12. ⟨10.1186/s40168-022-01457-y⟩
Journal articles pasteur-04086913v1
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Editorial: real‐world evidence of tofacitinib and vedolizumab in ulcerative colitis—are we one step closer to better positioning therapies after anti‐TNF failure? Authors' reply

Anthony Buisson
Alimentary Pharmacology & Therapeutics (Suppl), 2023, 57 (6), pp.735-736. ⟨10.1111/apt.17405⟩
Journal articles hal-04056456v1

Gradient concentration strip–specific epidemiological cut-off values of antifungal drugs in various yeast species and five prevalent Aspergillus species complexes

Victor Mercier , Valérie Letscher-Bru , Marie-Elisabeth Bougnoux , Laurence Delhaes , Françoise Botterel , et al.
Clinical Microbiology and Infection, 2022, 29 (5), pp.652.e9-652.e15. ⟨10.1016/j.cmi.2022.11.030⟩
Journal articles hal-03994435v1

Adalimumab in biologic-naïve patients with Crohn’s disease after resolution of an intra-abdominal abscess: a prospective study from the GETAID

Yoram Bouhnik , Guillaume Pineton de Chambrun , Jérôme Lambert , Maria Nachury , Philippe Seksik , et al.
Clinical Gastroenterology and Hepatology, 2023, ⟨10.1016/j.cgh.2023.01.013⟩
Journal articles hal-03981017v1

Positive margins and plexitis increase the risk of recurrence after ileocecal resection: A systematic review and meta-analysis

Clara Yzet , Clémentine Riault , Franck Brazier , Lucien Grados , Eric Nguyen-Khac , et al.
Digestive and Liver Disease, 2023, ⟨10.1016/j.dld.2022.12.021⟩
Journal articles hal-03958242v1
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Correlation between DNA Methylation and cell proliferation identifies new candidate predictive markers in meningioma

Sébastien Hergalant , Chloé Saurel , Marion Divoux , Fabien Rech , Celso Pouget , et al.
Cancers, 2022, 14 (24), pp.6227. ⟨10.3390/cancers14246227⟩
Journal articles hal-03939191v1
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Mucolytic bacteria license pathobionts to acquire host-derived nutrients during dietary nutrient restriction

Kohei Sugihara , Sho Kitamoto , Prakaimuk Saraithong , Hiroko Nagao-Kitamoto , Matthew Hoostal , et al.
Cell Reports, 2022, 40 (3), pp.111093. ⟨10.1016/j.celrep.2022.111093⟩
Journal articles hal-03907428v1
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An adherent-invasive Escherichia coli -colonized mouse model to evaluate microbiota-targeting strategies in Crohn's disease

Adeline Sivignon , Mélissa Chervy , Caroline Chevarin , Elia Ragot , Elisabeth Billard , et al.
Disease Models & Mechanisms, 2022, 15 (10), pp.dmm049707. ⟨10.1242/dmm.049707⟩
Journal articles hal-03907399v1
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Determination of biomarkers associated with neoadjuvant treatment response focusing on colibactin-producing Escherichia coli in patients with mid or low rectal cancer: a prospective clinical study protocol (MICARE)

Christophe Taoum , Guillaume Carrier , Marta Jarlier , Gwenaelle Roche , Johan Gagniere , et al.
BMJ Open, 2022, 12 (12), pp.e061527. ⟨10.1136/bmjopen-2022-061527⟩
Journal articles hal-03907379v1

Safety of Vaccination against SARS-CoV-2 in People with Rheumatic and Musculoskeletal Diseases: Results from the EULAR Coronavirus Vaccine (COVAX) Physician-Reported Registry

Pedro M Machado , Saskia Lawson-Tovey , Anja Strangfeld , Elsa F Mateus , Kimme L Hyrich , et al.
Annals of the Rheumatic Diseases, 2022, 81 (5), pp.695--709. ⟨10.1136/annrheumdis-2021-221490⟩
Journal articles hal-03896047v1

Evaluation of the Bio-Evolution Microsporidia generic and typing real-time PCR assays for the diagnosis of intestinal microsporidiosis

Maxime Moniot , Céline Nourrisson , Virginie Bonnin , Céline Damiani , Nicolas Argy , et al.
Parasite, 2022, 29 (55), pp.1-8. ⟨10.1051/parasite/2022055⟩
Journal articles hal-03881459v1
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Epigenetic master regulators HDAC1 and HDAC5 control pathobiont Enterobacteria colonization in ileal mucosa of Crohn’s disease patients

Mélissa Chervy , Adeline Sivignon , Flavie Dambrine , Anthony Buisson , Pierre Sauvanet , et al.
Gut microbes, 2022, 14 (1), pp.1-13. ⟨10.1080/19490976.2022.2127444⟩
Journal articles hal-03881385v1

Role of megaplasmids and chromosomal integration in acquisition of CTX-M-encoding genes by Pseudomonas aeruginosa

Pauline Triponney , Maxime Bour , Racha Beyrouthy , Richard Bonnet , Patrick Plésiat , et al.
Journal of Antimicrobial Chemotherapy, 2022, 77 (11), pp.3194-3198. ⟨10.1093/jac/dkac302⟩
Journal articles hal-03880013v1